Topological Filtering

Model space exploration for ODE models based on approximate parameter space exploration.This MATLAB package implements and extends the topological filtering method initially described in [1].

Download

v0.3.2 (2016-11-08):
DownloadTopoFilter-v0.3.2.tar (TAR, 2.1 MB)

v0.3 (2016-03-01), initial release:
external pageTopoFilter-v0.3.tar (TAR, 2.0 MB)

Git Repository

external pageTopoFilter @ GitLab

License

TopoFilter is licensed under the
DownloadGNU General Public License Version 3 (TXT, 34 KB).

Reference

Sunnaker M, Zamora-Sillero E, Dechant R, Ludwig C, Busetto AG, Wagner A, Stelling J (2013) Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism. Sci Signal 6: ra41. external pagehttp://doi.org/10.1126/scisignal.2003621.