Model space exploration for ODE models based on approximate parameter space exploration.
YouScope is a free, open-source microscope control software compatible with most present-day automized microscopes. YouScope allows to easily automatize complex microscopy protocols using an user-friendly graphical interface.
openBIS LIMS-ELN is an Electronic Laboratory Notebook and a Laboratory Information Management System solution suitable for the academic life science laboratories.
CellX is a tool for segmentation, fluorescence quantification, and tracking of cells on microscopy images. The image segmentation package is also available for MATLAB.
The polco tool enumerates extreme rays of polyhedral cones. It can also be used to enumerate vertices of polytopes, and for the dual problem, the enumeration of facets given the extreme points (aka convex hull).
A MATLAB package to sample high-dimensional parameter spaces in dynamical systems models of regulatory circuits in cell and developmental biology.
MATLAB package for evaluation of parameter points in models based on stochastic differential equations.
A tool to assist name mapping if different nomenclatures are used by different models (e.g. metabolic networks).
Java tool to convert various metabolic network source files into SBML / MATLAB files.